Development of a Computationally Efficient Tabulated Chemistry Solver for Internal Combustion Engine Optimization Using Stochastic Reactor Models

The use of chemical kinetic mechanisms in computer aided engineering tools for internal combustion engine simulations is of high importance for studying and predicting pollutant formation of conventional and alternative fuels. However, usage of complex reaction schemes is accompanied by high computational cost in 0-D, 1-D and 3-D computational fluid dynamics frameworks. The present work aims to address this challenge and allow broader deployment of detailed chemistry-based simulations, such as in multi-objective engine optimization campaigns. A fast-running tabulated chemistry solver coupled to a 0-D probability density function-based approach for the modelling of compression and spark ignition engine combustion is proposed. A stochastic reactor engine model has been extended with a progress variable-based framework, allowing the use of pre-calculated auto-ignition tables instead of solving the chemical reactions on-the-fly. As a first validation step, the tabulated chemistry-based solver is assessed against the online chemistry solver under constant pressure reactor conditions. Secondly, performance and accuracy targets of the progress variable-based solver are verified using stochastic reactor models under compression and spark ignition engine conditions. Detailed multicomponent mechanisms comprising up to 475 species are employed in both the tabulated and online chemistry simulation campaigns. The proposed progress variable-based solver proved to be in good agreement with the detailed online chemistry one in terms of combustion performance as well as engine-out emission predictions (CO, CO2, NO and unburned hydrocarbons). Concerning computational performances, the newly proposed solver delivers remarkable speed-ups (up to four orders of magnitude) when compared to the online chemistry simulations. In turn, the new solver allows the stochastic reactor model to be computationally competitive with much lower order modeling approaches (i.e., Vibe-based models). It also makes the stochastic reactor model a feasible computer aided engineering framework of choice for multi-objective engine optimization campaigns

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field